package biotk

  1. Overview
  2. Docs
Bioinformatics toolkit

Install

Dune Dependency

Authors

Maintainers

Sources

biotk-0.2.0.tbz
sha256=150bdb563e4c9ab69237a02639c90a809fcb075e04fe90ac3ef3ef369a5cbfb0
sha512=ba94c20ffdbbf486867463e29dba18bee2005294c6a6bf49bb96b86cb62f7f6ec213607b2c1870fb6242fe23f76035db5a381e745ca0cc99cd2ee1236285e20d

Description

biotk implements various functionalities in computational biology, like parsers/unparsers for some file formats, a few basic data structures and sequence algorithms, as well as access to some databases.

Published: 13 Feb 2023

README

Biotoolkit library

biotk implements various functionalities in computational biology, like parsers/unparsers for some file formats, a few basic data structures and sequence algorithms, as well as access to some databases.

Installation

Latest release

opam install biotk

Latest commit

opam pin add -y biotk https://github.com/pveber/biotk.git

Dependencies (21)

  1. zlib >= "0.6"
  2. tyxml >= "4.4.0"
  3. vg
  4. uri >= "4.2.0"
  5. rresult >= "0.6.0"
  6. result >= "1.5"
  7. ppx_deriving
  8. ppx_csv_conv
  9. otfm
  10. ocaml >= "4.13.0"
  11. gsl
  12. fmt
  13. crunch >= "3.2.0"
  14. core_unix >= "v0.15.0"
  15. core_kernel >= "v0.15.0"
  16. core >= "v0.15.0" & < "v0.16.0"
  17. camlzip >= "1.05"
  18. binning
  19. angstrom-unix >= "0.15.0"
  20. angstrom >= "0.15.0"
  21. dune >= "2.7"

Dev Dependencies (2)

  1. odoc with-doc
  2. core_bench with-test

Used by (2)

  1. bistro-bio
  2. phylogenetics >= "0.2.0"

Conflicts

None