package bistro

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in-package search v0.2.0

package bistro

bistro
- Bistro
  - Private
  - Shell_dsl
  - Template_dsl
  - Workflow
  - binary_file
  - bz2
  - csv
  - directory_t
  - gz
  - html
  - pdf
  - png
  - regular_file_t
  - sexp_value
  - svg
  - tar
  - text
  - tsv
  - zip
bistro.engine
- Bistro_engine
  - Allocator
  - Db
  - Docker
  - Eval_thread
    
    Infix
  - Execution_env
  - Execution_trace
    
    Outcome
    
    Run_details
    
    Set
  - Local_backend
  - Logger
    
    t
  - Lwt_queue
  - Misc
  - Path
  - Scheduler
    
    Backend
    
    Gc
    
    Make
    
    Backend
  - Shell_command
  - Singularity
bistro.internals
- Bistro_internals
  - Command
  - Template
  - Workflow
    
    Any
    
    Map
    
    Set
    
    T
    
    Table
    
    Docker_image
    
    Singularity_image
bistro.multinode
- Bistro_multinode
  - Client
  - Server
bistro.nlp
- Bistro_nlp
  - Stanford_parser
    
    deps
bistro.script
- Bistro_script
bistro.unix
- Bistro_unix
  - Cmd
bistro.utils
- Bistro_utils
  - Console_logger
  - Dot_output
  - Html_logger
  - R_script
  - Repo
  - Report
    
    Md
  - Toplevel_eval
    
    Make
    
    P

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Module
Module type
Parameter
Class
Class type

type item

type t = item list

val (%>) : string list -> 'a Bistro.path Bistro.workflow -> item

val item : string list -> 'a Bistro.path Bistro.workflow -> item

val precious_item : _ Bistro.path Bistro.workflow -> item

val singleton : string -> 'a Bistro.path Bistro.workflow -> t

val add_prefix : string list -> t -> t

val shift : string -> t -> t

val build_main : 
  ?np:int ->
  ?mem:[ `GB of int ] ->
  ?loggers:Bistro_engine.Logger.t list ->
  ?allowed_containers:[ `Docker | `Singularity ] list ->
  ?bistro_dir:string ->
  ?collect:bool ->
  outdir:string ->
  t ->
  unit

val build : 
  ?np:int ->
  ?mem:[ `GB of int ] ->
  ?loggers:Bistro_engine.Logger.t list ->
  ?allowed_containers:[ `Docker | `Singularity ] list ->
  ?bistro_dir:string ->
  ?collect:bool ->
  outdir:string ->
  t ->
  unit Lwt.t

val to_workflow : outdir:string -> t -> unit Bistro.workflow

val cache_clip_dry_run : bistro_dir:string -> t -> int * int * int * int

val cache_clip : bistro_dir:string -> t -> unit