module Bai : sig ... endmodule Bam_iterator : sig ... endmodule Bed : sig ... endmodule Cisbp : sig ... endmodule Dataframe : sig ... endmodule Dna_sequence : sig ... endmodule Encode : sig ... endmodule Fasta : sig ... endmodule Fastq : sig ... endmodule FeatureCounts : sig ... endmodule GAnnot : sig ... endData structures to represent sets of (possibly annotated) genomic regions
module GLoc : sig ... endmodule Gcf : sig ... endGCF = Genomic coordinates format loosely defined as a TSV format whose first column represents a location with the syntax <chr>:<start>-<end>
module Gene : sig ... endmodule Gff : sig ... endmodule Gtf : sig ... endmodule Idr : sig ... endUtilities for the {https://github.com/nboley/idrIDR program
module Igv : sig ... endmodule Interval_union : sig ... endmodule Jaspar : sig ... endmodule Let_syntax : sig ... endmodule Line_oriented : sig ... endmodule List1 : sig ... endmodule Macs : sig ... endhttps://github.com/taoliu/MACS/blob/macs_v1/README.rst
module Macs2 : sig ... endInteraction with MACS2 peak caller
module Misc : sig ... endmodule NarrowPeak : sig ... endmodule Ncbi_genome : sig ... endmodule Nucleotide : sig ... endmodule Phylo_tree_draw : sig ... endmodule Pipe_parsers : sig ... endmodule Profile_matrix : sig ... endmodule Pwm : sig ... endPosition-weight matrix
module Pwm_stats : sig ... endImplementation of https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238751/
module RanT : sig ... endRange Traversal
module Range : sig ... endmodule Sam : sig ... endmodule Ucsc_genome_browser : sig ... endmodule Utils : sig ... endmodule Wfa : sig ... end