package kappa-library

You can search for identifiers within the package.

in-package search v0.2.0

kappa-library.generic
- Kappa_data_structures
  - Base64
  - Bigbuffer
  - Buffers
    
    Buffers
  - Cache
    
    Cache
    
    O
    
    OO
  - Circular_buffers
  - Color
  - Crc32
  - DynamicArray
    
    DynArray
    
    _
  - ExceptionDefn
  - Fifo
  - Fractions
  - GenArray
    
    GenArray
  - Hashed_list
    
    Hash
    
    Make
    
    A
  - Infinite_buffers
  - IntCollection
  - JsonUtil
  - LargeArray
  - List_util
    
    Infix
  - Loc
  - Mods
    
    CharSetMap
    
    Map
    
    Set
    
    DynArray
    
    Int2SetMap
    
    Map
    
    Set
    
    IntSetMap
    
    Map
    
    Set
    
    String2SetMap
    
    Map
    
    Set
    
    StringSetMap
    
    Map
    
    Set
  - NamedDecls
  - Nbr
  - Operator
    
    DepSet
  - Option_util
  - Pp
  - Pp_html
  - Random_tree
  - Renaming
  - Result_util
  - SetMap
    
    Make
    
    Map
    
    Ord
    
    Set
    
    Map
    
    OrderedType
    
    Proj
    
    A
    
    Map
    
    Set
    
    B
    
    Map
    
    Set
    
    Proj2
    
    A
    
    Map
    
    Set
    
    B
    
    Map
    
    Set
    
    C
    
    Map
    
    Set
    
    Projection
    
    Projection2
    
    S
    
    Map
    
    Set
    
    Set
  - Stop
  - Tools
  - ValMap
kappa-library.mixtures
- Kappa_site_graphs
  - Agent
    
    SetMap
    
    Map
    
    Set
  - Counters_info
  - Edges
  - Navigation
  - Signature
  - Snapshot
  - User_graph
kappa-library.runtime
- Kappa_runtime
  - Counter
    
    Efficiency
  - Data
  - Expr_interpreter
  - Fluxmap
  - Generic_rule_interpreter
    
    Make
    
    Instances
  - Instances
  - Instances_sig
    
    S
  - Replay
  - Resource_strings
  - Roots
  - Rule_interpreter
  - State_interpreter
  - Trace
    
    Simulation_info
kappa-library.terms
- Kappa_terms
  - Alg_expr
  - Alg_expr_extra
  - Configuration
  - Contact_map
  - Instantiation
  - Kappa_printer
  - LKappa
  - Matching
    
    Agent
  - Model
  - Pattern
    
    Env
    
    Map
    
    ObsMap
    
    PreEnv
    
    Set
  - Pattern_compiler
  - Pattern_decompiler
  - Primitives
    
    Transformation
  - Raw_mixture
kappa-library.utils
- Kappa_utils
  - Utils

Legend:
Library
Module
Module type
Parameter
Class
Class type

Parsing utils

val write_to_channel : (Buffer.t -> 'a -> unit) -> out_channel -> 'a -> unit

val string_of_write : (Buffer.t -> 'a -> unit) -> ?len:int -> 'a -> string

val read_of_string : 
  (Yojson.Basic.lexer_state -> Lexing.lexbuf -> 'a) ->
  string ->
  'a

val read_between_spaces : 
  (Yojson.Basic.lexer_state -> Lexing.lexbuf -> 'a) ->
  Yojson.Basic.lexer_state ->
  Lexing.lexbuf ->
  'a

val read_next_item : 
  (Yojson.Basic.lexer_state -> Lexing.lexbuf -> 'a) ->
  Yojson.Basic.lexer_state ->
  Lexing.lexbuf ->
  'a

val write_comma : Buffer.t -> unit

Jsonify simple types

val build_msg : string -> string

val of_string : string -> Yojson.Basic.t

val to_string : ?error_msg:string -> Yojson.Basic.t -> string

val of_int : int -> Yojson.Basic.t

val to_int : ?error_msg:string -> Yojson.Basic.t -> int

val of_bool : bool -> Yojson.Basic.t

val to_bool : ?error_msg:string -> Yojson.Basic.t -> bool

val of_unit : unit -> Yojson.Basic.t

val to_unit : ?error_msg:string -> Yojson.Basic.t -> unit

val of_option : ('a -> Yojson.Basic.t) -> 'a option -> Yojson.Basic.t

val to_option : (Yojson.Basic.t -> 'a) -> Yojson.Basic.t -> 'a option

Beware: `Null is reserved for None

val write_option : (Buffer.t -> 'a -> unit) -> Buffer.t -> 'a option -> unit

val read_option : 
  (Yojson.Basic.lexer_state -> Lexing.lexbuf -> 'a) ->
  Yojson.Basic.lexer_state ->
  Lexing.lexbuf ->
  'a option

val of_list : ('a -> Yojson.Basic.t) -> 'a list -> Yojson.Basic.t

val to_list : 
  ?error_msg:string ->
  (Yojson.Basic.t -> 'a) ->
  Yojson.Basic.t ->
  'a list

val write_list : (Buffer.t -> 'a -> unit) -> Buffer.t -> 'a list -> unit

val of_array : ('a -> Yojson.Basic.t) -> 'a array -> Yojson.Basic.t

val to_array : 
  ?error_msg:string ->
  (Yojson.Basic.t -> 'a) ->
  Yojson.Basic.t ->
  'a array

val write_array : (Buffer.t -> 'a -> unit) -> Buffer.t -> 'a array -> unit

val write_sequence : Buffer.t -> (Buffer.t -> unit) list -> unit

val read_variant : 
  (Yojson.Basic.lexer_state -> Lexing.lexbuf -> 'a) ->
  (Yojson.Basic.lexer_state -> Lexing.lexbuf -> 'a -> 'b) ->
  Yojson.Basic.lexer_state ->
  Lexing.lexbuf ->
  'b

val smart_assoc : (string * Yojson.Basic.t) list -> Yojson.Basic.t

Similar to of_assoc, but does not include fields whose value is 'null', '' or '{}'

val of_assoc : ('a -> string * Yojson.Basic.t) -> 'a list -> Yojson.Basic.t

val to_assoc : 
  ?error_msg:string ->
  ((string * Yojson.Basic.t) -> 'a) ->
  Yojson.Basic.t ->
  'a list

val write_field : string -> (Buffer.t -> 'a -> unit) -> Buffer.t -> 'a -> unit

val of_pair : 
  ?lab1:string ->
  ?lab2:string ->
  ('a -> Yojson.Basic.t) ->
  ('b -> Yojson.Basic.t) ->
  ('a * 'b) ->
  Yojson.Basic.t

val to_pair : 
  ?lab1:string ->
  ?lab2:string ->
  ?error_msg:string ->
  (Yojson.Basic.t -> 'a) ->
  (Yojson.Basic.t -> 'b) ->
  Yojson.Basic.t ->
  'a * 'b

val write_compact_pair : 
  (Buffer.t -> 'a -> unit) ->
  (Buffer.t -> 'b -> unit) ->
  Buffer.t ->
  ('a * 'b) ->
  unit

val read_compact_pair : 
  (Yojson.Basic.lexer_state -> Lexing.lexbuf -> 'a) ->
  (Yojson.Basic.lexer_state -> Lexing.lexbuf -> 'b) ->
  Yojson.Basic.lexer_state ->
  Lexing.lexbuf ->
  'a * 'b

val compact_to_pair : 
  (Yojson.Basic.t -> 'a) ->
  (Yojson.Basic.t -> 'b) ->
  Yojson.Basic.t ->
  'a * 'b

val of_triple : 
  ?lab1:string ->
  ?lab2:string ->
  ?lab3:string ->
  ('a -> Yojson.Basic.t) ->
  ('b -> Yojson.Basic.t) ->
  ('c -> Yojson.Basic.t) ->
  ('a * 'b * 'c) ->
  Yojson.Basic.t

val to_triple : 
  ?lab1:string ->
  ?lab2:string ->
  ?lab3:string ->
  ?error_msg:string ->
  (Yojson.Basic.t -> 'a) ->
  (Yojson.Basic.t -> 'b) ->
  (Yojson.Basic.t -> 'c) ->
  Yojson.Basic.t ->
  'a * 'b * 'c

val of_map : 
  ?lab_key:string ->
  ?lab_value:string ->
  fold:
    (('key -> 'value -> Yojson.Basic.t list -> Yojson.Basic.t list) ->
      'map ->
      Yojson.Basic.t list ->
      Yojson.Basic.t list) ->
  ('key -> Yojson.Basic.t) ->
  ('value -> Yojson.Basic.t) ->
  'map ->
  Yojson.Basic.t

val to_map : 
  ?lab_key:string ->
  ?lab_value:string ->
  ?error_msg:string ->
  add:('key -> 'value -> 'map -> 'map) ->
  empty:'map ->
  (Yojson.Basic.t -> 'key) ->
  (Yojson.Basic.t -> 'value) ->
  Yojson.Basic.t ->
  'map

val of_unix_label : UnixLabels.error -> Yojson.Basic.t

val to_unix_label : Yojson.Basic.t -> UnixLabels.error

val of_unix_error : Unix.error -> Yojson.Basic.t

val to_unix_error : Yojson.Basic.t -> Unix.error

val std_json_string_of_float : float -> string