package phylogenetics

  1. Overview
  2. Docs
package phylogenetics
Legend:
Library
Module
Module type
Parameter
Class
Class type

Parameters

module A : Alphabet.S_int
module BI : Branch_info

Signature

val transition_matrix : (BI.t -> A.matrix) -> BI.t -> A.matrix
val site_exponential_method : Gsl.Rng.t -> ('n, 'l, BI.t) Tree.t -> root:A.t -> transition_matrix:(BI.t -> A.matrix) -> ('n * A.t, 'l * A.t, BI.t) Tree.t
val branch_gillespie_direct : Gsl.Rng.t -> start_state:A.t -> rate_matrix:A.matrix -> branch_length:float -> init:'a -> f:('a -> A.t -> float -> 'a) -> 'a
val site_gillespie_direct : Gsl.Rng.t -> ('n, 'l, BI.t) Tree.t -> root:A.t -> rate_matrix:(BI.t -> A.matrix) -> ('n * A.t, 'l * A.t, BI.t) Tree.t
val site_gillespie_first_reaction : Gsl.Rng.t -> ('n, 'l, BI.t) Tree.t -> root:A.t -> rate_matrix:(BI.t -> A.matrix) -> ('n * A.t, 'l * A.t, BI.t) Tree.t
val sequence_gillespie_direct : Gsl.Rng.t -> ('n, 'l, BI.t) Tree.t -> update_iterator:(n:int -> pos:int -> (int -> unit) -> unit) -> root:A.t array -> rate_vector:(BI.t -> A.t array -> int -> float A.table) -> ('n * A.t array, 'l * A.t array, BI.t) Tree.t
val hmm0 : Gsl.Rng.t -> len:int -> dist:(int -> float A.table) -> A.t array
OCaml

Innovation. Community. Security.

GitHub Discord Twitter Peertube RSS
About
Changelog Releases Industrial Users Academic Users Why OCaml
Ecosystem
Packages Community Events OCaml Planet Jobs
Resources
Install OCaml Get Started Platform Tools Language Manual Standard Library API Books Exercises Papers OCaml Playground Logo
Policies
Carbon Footprint Governance Privacy Code of Conduct