package phylogenetics

  1. Overview
  2. Docs
package phylogenetics
Legend:
Library
Module
Module type
Parameter
Class
Class type

Zipper type for fast operations on large phylogenetic trees.

Types
type t
type branch = float * Phylogenetic_tree.t
type direction =
  1. | Dir0
  2. | Dir1
  3. | Dir2
type location_type =
  1. | LocLeaf
  2. | LocBranch
  3. | LocNode
type oriented_zipper
Creation / conversion
val of_tree : Phylogenetic_tree.t -> t
val to_tree : t -> Phylogenetic_tree.t
val orient : t -> direction -> oriented_zipper
val unorient : oriented_zipper -> t
Constructors / object manipulation
val string_of_dir : direction -> string
val dir_of_string : string -> direction
Observation
val equal : t -> t -> bool
val get_branch : t -> direction -> branch
val get_index : t -> Sigs.index
val get_length : t -> direction -> float
val get_tree : t -> direction -> Phylogenetic_tree.t
val length_left : oriented_zipper -> float
val length_right : oriented_zipper -> float
val location : t -> location_type
Movement
val goto : t -> int -> t
val init_routing : t -> t
val move : t -> direction -> t
val move_left : oriented_zipper -> oriented_zipper
val move_right : oriented_zipper -> oriented_zipper
val random_node : t -> t
val right : oriented_zipper -> direction
val slide : t -> direction -> float -> t
Pretty printing
val pp : Stdlib.Format.formatter -> t -> unit
val pp_fancy : Stdlib.Format.formatter -> t -> unit
val print : t -> unit
val print_fancy : t -> unit
OCaml

Innovation. Community. Security.

GitHub Discord Twitter Peertube RSS
About
Changelog Releases Industrial Users Academic Users Why OCaml
Ecosystem
Packages Community Events OCaml Planet Jobs
Resources
Install OCaml Get Started Platform Tools Language Manual Standard Library API Books Exercises Papers OCaml Playground Logo
Policies
Carbon Footprint Governance Privacy Code of Conduct